scan4matching: Scan through suggested pairs of neurons

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Scan through suggested pairs of neurons

Description

implementation of the algorithm for clustering neurons by synapse location from Schlegel et al. (2016). Assumes neurons are scaled to microns.

Usage

scan4matching(someneuronlist, pairs, reference, ...)

Arguments

someneuronlist	a neuronlist or neuron object
pairs	A data frame / matrix of two columns named skid.right and skid.left perhaps generated using the deformetricar package to estimate neuron cognates.
reference	A reference object to plot. E.g. CNS cortex.
...	additional arguments passed to methods.

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.