soma: Functions for retrieving soma data

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Functions for retrieving soma data

Description

Functions for retrieving data about somata from skeletons, that has been assigned in CATMAID using the tag system

Usage

soma(x, ...)

## S3 method for class 'neuronlist'
soma(x, ...)

## S3 method for class 'neuron'
soma(x, ...)

somaid(x, ...)

## S3 method for class 'neuronlist'
somaid(x, ...)

## S3 method for class 'neuron'
somaid(x, ...)

somapos(x, ...)

## S3 method for class 'neuronlist'
somapos(x, ...)

## S3 method for class 'neuron'
somapos(x)

Arguments

x	a neuron or neuronlist object
...	additional arguments passed to methods

Details

CATMAID access required. Data collected and described in cited publication.

Value

Either the soma's 3D coordinates (soma) its id number (somaid) or its position in the neuron's skeleton (somapos)

References

Ohyama T, Schneider-Mizell CM, Fetter RD, Aleman JV, Franconville R, Rivera-Alba M, Mensh BD, Branson KM, Simpson JH, Truman JW, et al. (2015) A multilevel multimodal circuit enhances action selection in Drosophila. Nature.

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.