nblast_bothways: NBLAST two different sets of neurons forwards and backwards

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

NBLAST two different sets of neurons forwards and backwards

Description

NBLAST two different sets of neurons forwards and backwards, and take the mean of these results

Usage

nblast_bothways(
  group1,
  group2 = group1,
  smat = NULL,
  sd = 3,
  version = c(2, 1),
  normalised = FALSE,
  UseAlpha = FALSE,
  OmitFailures = NA
)

Arguments

group1	a neuronlist object
group2	a neuronlist object, defaults to group1
smat	the score matrix to be used. See ?nblast.
sd	Standard deviation to use in distance dependence of nblast v1 algorithm. Ignored when version=2
version	the version of the algorithm to use (the default, 2, is the latest)
normalised	whether to divide scores by the self-match score of the query
UseAlpha	whether to consider local directions in the similarity calculation (default: FALSE)
OmitFailures	Whether to omit neurons for which FUN gives an error. The default value (NA) will result in nblast stopping with an error message the moment there is an error
...	additional arguments passed to methods

Value

a dotprops object

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.