get_connected_skeletons | R Documentation |
Gets neurons downstream/upstream of a query set of skeletons from a CATMAID database
get_connected_skeletons(
someneuronlist,
X = c(upper = 1e+08, lower = 0),
Y = c(upper = 1e+08, lower = 0),
Z = c(upper = 1e+08, lower = 0),
min_nodes = 1000,
max_nodes = NULL,
min_synapses = 4,
prepost = NULL,
soma = T,
exclude.skids = NULL,
...
)
someneuronlist |
a 3D shape, neuronlist or neuron object that has been plotted in 3D whose coordinates can be accessed with nat::xyzmatrix() |
X |
The upper and lower bounds for acceptable X coordinates |
Y |
The upper and lower bounds for acceptable Y coordinates |
Z |
The upper and lower bounds for acceptable Z coordinates |
min_nodes |
Minimum number of nodes wanted in returned neuronlist |
max_nodes |
Maximum number of nodes wanted in returned neuronlist |
min_synapses |
Minimum number of synapses required from/to any neuron of the query group |
prepost |
Whether to return downstream neurons (0), upstream neurons (1) or both (NULL) |
soma |
Whether returned neurons must have a soma or not. Defaults to T. |
exclude.skids |
skids of neurons |
... |
additional arguments passed to methods. |
CATMAID access required.
A neuronlist object
skeleton_connectivity_matrix
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