Man pages for alexology/biomonitoR
biomonitoring indices and metrics
| abundance | abundance |
| abundance_classes | transform abundance-coverage data to classes |
| add_bias_to_traits | add_bias_to_traits |
| aggregate_taxa | aggregate_taxa |
| allindices | Functions for calculating diversity, evenness and dominance... |
| allrich | Function for calculating richness at different taxonomic... |
| as_biomonitor | Import data into biomonitoR format |
| aspt | Average Score Per Taxon |
| assign_traits | Assign traits to taxa at different taxonomic levels |
| bin | Check a vector for presence-absence |
| bioco | biocontamination index |
| bmwp | bmwp |
| combine_taxa | combine_taxa |
| convert_to_vegan | convert data to other formats |
| csi | Community trait specialization |
| cwm | Community-Weighted Mean values of traits |
| defunct | Defunct functions |
| dehli | Drought Effect of Habitat Loss on Invertebrates |
| dness | dness |
| epsi | Empyrically-weighted Proportion of Sediment-sensitive... |
| ept | ept |
| eptd | eptd |
| f_disp | Functional dispersion |
| f_divs | Functional diversity |
| f_eve | Functional evenness |
| flow_t | Flow-T index |
| f_red | Functional redundancy |
| f_rich | f_rich |
| fuzzy_trait_ratio | Indices from fuzzy coded data |
| general_info | general_info |
| get_gbif_taxa_tree | Create 'biomonitoR' dataset from GBIF |
| get_iucn_taxa_tree | Create biomonitoR reference dataset from GBIF |
| get_nbn_taxa_tree | Create 'biomonitoR' reference dataset from the National... |
| get_reference_db | Function to download reference taxonomic trees, traits... |
| get_taxa_abundance | get_taxa_abundance |
| get_taxa_richness | get_taxa_richness |
| get_worms_taxa_tree | Function for creating reference databases using API from... |
| ibmr | Biologique Macrofitique en Riviere index |
| igold | igold |
| life | Lotic-invertebrate Index for Flow Evaluation index |
| macro_ex | Apennine invertebrate dataset |
| manage_traits | manage_traits |
| mi_prin | Apennines invertebrate dataset |
| oglio | Oglio River macrophyte dataset |
| plot.asb | Plot objects generated with as_biomonitor |
| plot.biomonitoR | Plot biomonitoR object |
| plot_indicator_taxa | Plot indicator taxa |
| psi | Proportion of Sediment-sensitive Invertebrates index |
| quick_rename | quick_rename |
| ref_from_tree | Reference from taxonomic tree |
| remove_taxa | remove_taxa |
| select_pcoa_axes | Select optimal number of pcoa axes |
| show_scores | show_scores |
| solve_ambiguous | Methods to deal with ambiguous taxa |
| subset.asb | subset.asb |
| to_bin | Abundance to presence-absence |
| traits_mf | Traits for macrophytes |
| Tree | Taxonomic tree example |
| whpt | Whalley Hawkes Paisley Trigg index |
