get_worms_taxa_tree: Function for creating reference databases using API from...

In alexology/biomonitoR: biomonitoring indices and metrics

Function for creating reference databases using API from World Register of Marine Species (WORMS)

Description

This function allows creating our custom reference database using API from World Register of Marine Species (WORMS).

Usage

get_worms_taxa_tree(x, ref_from_tree = FALSE)

Arguments

x	Vector contain your Taxa list.
ref_from_tree	Create a reference database in the biomonitoR format. See ref_from_tree.

See Also

as_biomonitor

Examples

## Not run: 

data(macro_ex)
dfref_worms <- get_worms_taxa_tree(macro_ex[, "Taxa"])
data_asb <- as_biomonitor(macro_ex, dfref = dfref_worms$taxonomy)
data_agg <- aggregate_taxa(data_asb)


## End(Not run)

alexology/biomonitoR documentation built on Oct. 10, 2024, 12:02 a.m.