Files in alexology/biomonitoR

biomonitoring indices and metrics

.Rbuildignore

.covrignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md R/Pi.R R/Tree.R R/abu.R R/abundance.R R/abundance_classes.R R/add_bias_to_traits.R R/agg_fun.R R/aggregate_taxa.R R/allindices.R R/allrich.R R/as_biomonitor.R R/as_data_frame_asb.R R/aspt.R R/assign_traits.R R/average_traits.R R/berpar.R R/bin.R R/bioco.R R/bmwp.R R/bray_curtis.R R/brill.R R/capWords.R R/checkBmwpFam.R R/checkTree.R R/classCheck.R R/combine_taxa.R R/convert_to_biotic.R R/convert_to_vegan.R R/csi.R R/cwm.R R/ddis.R R/defunct.R R/dehli.R R/dness.R R/epsi.R R/ept.R R/eptd.R R/esimpson.R R/f_disp.R R/f_divs.R R/f_eve.R R/f_red.R R/f_rich.R R/fisher.R R/flow_t.R R/fuzzy_trait_ratio.R R/general_info.R R/get_gbif_taxa.R R/get_iucn_taxa.R R/get_nbn_taxa.R R/get_taxa_abundance.R R/get_taxa_richness.R R/get_worms_taxa.R R/helpers.R R/ibmr.R R/igold.R R/indval_biomonitor.R R/invberpar.R R/invsimpson.R R/life.R R/macro_ex.R R/manage_inconsistencies.R R/manage_traits.R R/margalef.R R/mcintosh.R R/menhinick.R R/mi_prin.R R/newDictio.R R/oglio.R R/pcoaQuality.R R/pielou.R R/plot_asb.R R/plot_biomonitoR.R R/plot_indicator_taxa.R R/psi.R R/qfs.R R/quick_rename.R R/ref_from_tree.R R/remove_taxa.R R/richness.R R/sample_traits.R R/select_pcoa_axes.R R/shannon.R R/show_scores.R R/silhouette_biomonitor.R R/simpson.R R/solve_ambiguous.R R/suggestUserNames.R

R/sysdata.rda

R/to_bin.R R/traits_mf.R R/tsi.R R/whpt.R R/zero_dist_traits.R R/zzz.R README.md

biomonitoR.Rproj

codecov.yml

data/Tree.rda

data/macro_ex.rda

data/mi_prin.rda

data/oglio.rda

data/traits_mf.rda

inst/CITATION

inst/dict/di_dictionary.txt

inst/dict/fi_dictionary.txt

inst/dict/mf_dictionary.txt

inst/dict/mi_dictionary.txt

inst/testdata/ambiguous_df.rda

inst/testdata/ambiguous_mcwp_abu.rda

inst/testdata/ambiguous_mcwp_bin.rda

inst/testdata/ambiguous_rpkc_abu.rda

inst/testdata/ambiguous_rpkc_bin.rda

inst/testdata/aspt_bmwp_spain.rda

inst/testdata/assigned_traits.rda

inst/testdata/comm_dness.rda

inst/testdata/data_uk_bioco.rda

inst/testdata/ibmr_results.rda

inst/testdata/ibmr_taxa.rda

inst/testdata/macro_ex_genus.rda

inst/testdata/macro_ex_mod_asb.rda

inst/testdata/macro_traits.rda

inst/testdata/metrics_uk_data.rda

inst/testdata/past_results_abu.rda

inst/testdata/past_results_bin.rda

inst/testdata/past_results_genus.rda

inst/testdata/ref_def.rda

inst/testdata/sample_traits_run1.rda

inst/testdata/sample_traits_run2.rda

inst/testdata/tax_tree.rda

inst/testdata/taxa_uk_data.rda

inst/testdata/to_change.rda

inst/testdata/to_change_asb.rda

inst/testdata/traits.rda

inst/testdata/tree_ref.rda

man/Tree.Rd man/abundance.Rd man/abundance_classes.Rd man/add_bias_to_traits.Rd man/aggregate_taxa.Rd man/allindices.Rd man/allrich.Rd man/as_biomonitor.Rd man/aspt.Rd man/assign_traits.Rd man/bin.Rd man/bioco.Rd man/bmwp.Rd man/combine_taxa.Rd man/convert_to_vegan.Rd man/csi.Rd man/cwm.Rd man/defunct.Rd man/dehli.Rd man/dness.Rd man/epsi.Rd man/ept.Rd man/eptd.Rd man/f_disp.Rd man/f_divs.Rd man/f_eve.Rd man/f_red.Rd man/f_rich.Rd

man/figures/lifecycle-archived.svg

man/figures/lifecycle-defunct.svg

man/figures/lifecycle-deprecated.svg

man/figures/lifecycle-experimental.svg

man/figures/lifecycle-maturing.svg

man/figures/lifecycle-questioning.svg

man/figures/lifecycle-stable.svg

man/figures/lifecycle-superseded.svg

man/figures/logo.png

man/flow_t.Rd man/fuzzy_trait_ratio.Rd man/general_info.Rd man/get_gbif_taxa_tree.Rd man/get_iucn_taxa_tree.Rd man/get_nbn_taxa_tree.Rd man/get_taxa_abundance.Rd man/get_taxa_richness.Rd man/get_worms_taxa_tree.Rd man/ibmr.Rd man/igold.Rd man/life.Rd man/macro_ex.Rd man/manage_traits.Rd man/mi_prin.Rd man/oglio.Rd man/plot.asb.Rd man/plot.biomonitoR.Rd man/plot_indicator_taxa.Rd man/psi.Rd man/quick_rename.Rd man/ref_from_tree.Rd man/remove_taxa.Rd man/select_pcoa_axes.Rd man/show_scores.Rd man/solve_ambiguous.Rd man/subset.asb.Rd man/to_bin.Rd man/traits_mf.Rd man/whpt.Rd tests/testthat.R tests/testthat/test-ambiguous.R tests/testthat/test-aspt_bmwp.R tests/testthat/test-bioco.R tests/testthat/test-combine_taxa.R tests/testthat/test-data_management.R tests/testthat/test-diversity.R tests/testthat/test-dness.R tests/testthat/test-epsi.R tests/testthat/test-ibmr.R tests/testthat/test-import.R tests/testthat/test-other_indices.R tests/testthat/test-pcoa.R tests/testthat/test-richness.R tests/testthat/test-scores.R tests/testthat/test-traits.R tests/testthat/test-uk_data.R

vignettes/.gitignore

vignettes/functional.R vignettes/functional.Rmd

vignettes/functional.html

vignettes/introduction.R vignettes/introduction.Rmd

vignettes/introduction.html

alexology/biomonitoR documentation built on April 7, 2024, 10:15 a.m.