Man pages for alexology/biomonitoR
biomonitoring indices and metrics

abundanceabundance
abundance_classestransform abundance-coverage data to classes
add_bias_to_traitsadd_bias_to_traits
aggregate_taxaaggregate_taxa
allindicesFunctions for calculating diversity, evenness and dominance...
allrichFunction for calculating richness at different taxonomic...
as_biomonitorImport data into biomonitoR format
asptAverage Score Per Taxon
assign_traitsAssign traits to taxa at different taxonomic levels
binCheck a vector for presence-absence
biocobiocontamination index
bmwpbmwp
combine_taxacombine_taxa
convert_to_veganconvert data to other formats
csiCommunity trait specialization
cwmCommunity-Weighted Mean values of traits
defunctDefunct functions
dehliDrought Effect of Habitat Loss on Invertebrates
dnessdness
epsiEmpyrically-weighted Proportion of Sediment-sensitive...
eptept
eptdeptd
f_dispFunctional dispersion
f_divsFunctional diversity
f_eveFunctional evenness
flow_tFlow-T index
f_redFunctional redundancy
f_richf_rich
fuzzy_trait_ratioIndices from fuzzy coded data
general_infogeneral_info
get_gbif_taxa_treeCreate 'biomonitoR' dataset from GBIF
get_iucn_taxa_treeCreate biomonitoR reference dataset from GBIF
get_nbn_taxa_treeCreate 'biomonitoR' reference dataset from the National...
get_taxa_abundanceget_taxa_abundance
get_taxa_richnessget_taxa_richness
get_worms_taxa_treeFunction for creating reference databases using API from...
ibmrBiologique Macrofitique en Riviere index
igoldigold
lifeLotic-invertebrate Index for Flow Evaluation index
macro_exApennine invertebrate dataset
manage_traitsmanage_traits
mi_prinApennines invertebrate dataset
oglioOglio River macrophyte dataset
plot.asbPlot objects generated with as_biomonitor
plot.biomonitoRPlot biomonitoR object
plot_indicator_taxaPlot indicator taxa
psiProportion of Sediment-sensitive Invertebrates index
quick_renamequick_rename
ref_from_treeReference from taxonomic tree This function transforms a...
remove_taxaremove_taxa
select_pcoa_axesSelect optimal number of pcoa axes
show_scoresshow_scores
solve_ambiguousMethods to deal with ambiguous taxa
subset.asbsubset.asb
to_binAbundance to presence-absence
traits_mfTraits for macrophytes
TreeTaxonomic tree example
whptWhalley Hawkes Paisley Trigg index
alexology/biomonitoR documentation built on Sept. 17, 2022, 4:44 a.m.