plot.biomonitoR: Plot biomonitoR object

In alexology/biomonitoR: biomonitoring indices and metrics

Plot biomonitoR object

Description

barplot based on clustering methods

Usage

## S3 method for class 'biomonitoR'
plot(
  x,
  tax_lev = "Taxa",
  method = "ward.D2",
  relative = TRUE,
  unassigned = FALSE,
  trans = NULL,
  ...
)

Arguments

x	An object of class biomonitoR generated with aggregate_taxa.
tax_lev	Taxonomic level to be plotted.
method	Clustering method.
relative	Plot absolute or relative abundance.
unassigned	Remove unassigned taxa.
trans	Transformation to be applied to abundance data.
...	Further arguments to be passed to plot.

Examples

data(macro_ex)
data_bio <- as_biomonitor(mi_prin)
data_agr <- aggregate_taxa(data_bio)

alexology/biomonitoR documentation built on April 7, 2024, 10:15 a.m.