Files in alexpiper/seqateurs

Tools for trimming and processing sequence data

R/bbmap_utilities.R R/fastqc_utilities.R R/file_utilities.R R/filters.R R/helper_functions.R R/indexing.R R/plotting_utilities.R R/sample_tracking.R R/transformations.R R/utils-pipe.R README.md man/align_overlap.Rd man/bbdemux.Rd man/bbdemux2.Rd man/bbmap_install.Rd man/bbsplit.Rd man/bbsplit2.Rd man/bbtrim.Rd man/bbtrim2.Rd man/clr.Rd man/clrInv.Rd man/cluster_otus.Rd man/coalesce_join.Rd man/codon_filter.Rd man/create_logsheet.Rd man/create_mismatch.Rd man/create_samplesheet.Rd man/dot-findExecutable.Rd man/estimate_trunclen.Rd man/expit.Rd man/fast_melt.Rd man/fastqc.Rd man/fastqc_install.Rd man/get_qual_stats.Rd man/get_reading_frame.Rd man/gm_mean.Rd man/logit.Rd man/lowest_classified.Rd man/n_overlap.Rd man/na_to_unclassified.Rd man/parse_aqhist.Rd man/parse_bbdemux.Rd man/parse_bbtrim.Rd man/parse_bhist.Rd man/parse_gchist.Rd man/parse_lhist.Rd man/parse_qhist.Rd man/parse_seqrun.Rd man/pipe.Rd man/plot_lengths.Rd man/plot_maxEE.Rd man/plot_quality.Rd man/propagate_tax.Rd man/proportions.Rd man/ps_to_dnabin.Rd man/ps_to_fasta.Rd man/summarise_index.Rd man/summarise_taxa.Rd man/unclassified_to_na.Rd