na_to_unclassified: Convert NA classifications to the their highest successful...

In alexpiper/seqateurs: Tools for trimming and processing sequence data

Convert NA classifications to the their highest successful classification

Description

Convert NA classifications to the their highest successful classification

Usage

na_to_unclassified(x, sep = "__", rownames = TRUE, quiet = FALSE)

Arguments

x	A matrix, data frame or phyloseq object
sep	The seperator between the rank, and the name i.e. G__Drosophila would be the default for an OTU that could only be assigned to the genus Drosophila
rownames	Whether rownames should be returned, or instead an OTU column
quiet	Whether progress should be printed to console

See Also

unclassified_to_na

alexpiper/seqateurs documentation built on July 9, 2023, 7:21 a.m.