unclassified_to_na: Convert classifications that are annotated with their highest...

In alexpiper/seqateurs: Tools for trimming and processing sequence data

Convert classifications that are annotated with their highest successful classification back ot NA

Description

Convert classifications that are annotated with their highest successful classification back ot NA

Usage

unclassified_to_na(x, sep = "__", rownames = TRUE, quiet = FALSE)

Arguments

x	A matrix, data frame or phyloseq object
sep	The seperator between the rank, and the name i.e. G__Drosophila would be the default for an OTU that could only be assigned to the genus Drosophila
rownames	Whether rownames should be returned, or instead an OTU column
quiet	Whether progress should be printed to console

See Also

na_to_unclassified

alexpiper/seqateurs documentation built on July 9, 2023, 7:21 a.m.