cluster_otus: OTU clustering of DADA2 seqtab
In alexpiper/seqateurs: Tools for trimming and processing sequence data
View source: R/helper_functions.R
cluster_otus R Documentation
OTU clustering of DADA2 seqtab
Description
OTU clustering of DADA2 seqtab
Usage
cluster_otus(x, similarity = 0.97, cores = 1)
Arguments
x
The input object can be a DADA2 generated ASV table with columns as sequences and rows as samples,
a phyloseq object with or without refseqs, or a DNAbin or DNAStringSet.
similarity
A similarity threshold to cluster at. Must be a number between 0 and 1
cores
The number of processsor cores to use
alexpiper/seqateurs documentation built on July 9, 2023, 7:21 a.m.
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View source: R/helper_functions.R
| cluster_otus | R Documentation |
OTU clustering of DADA2 seqtab
Description
OTU clustering of DADA2 seqtab
Usage
cluster_otus(x, similarity = 0.97, cores = 1)
Arguments
x |
The input object can be a DADA2 generated ASV table with columns as sequences and rows as samples, a phyloseq object with or without refseqs, or a DNAbin or DNAStringSet. |
similarity |
A similarity threshold to cluster at. Must be a number between 0 and 1 |
cores |
The number of processsor cores to use |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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