ps_to_dnabin: ps_to_dnabin
In alexpiper/seqateurs: Tools for trimming and processing sequence data
ps_to_dnabin R Documentation
ps_to_dnabin
Description
ps_to_dnabin
Usage
ps_to_dnabin(ps, seqnames = "unique")
Arguments
ps
A phyloseq object that contains refseq.
If there the refseq slot is not filled, this function will try pull the
sequences from get_taxa
seqnames
(optional) A taxonomic rank from the tax_table which will be used to name the sequences.
alternatively "unique" will uniquely name the sequences as ASV_#,
"sequence" will name the sequences in the fasta exactly the same same as the sequence, usfull for LULU curation.
Examples
save_fasta(ps)
save_fasta(ps = ps, file = "sequences.fasta", rank = "Genus")
alexpiper/seqateurs documentation built on July 9, 2023, 7:21 a.m.
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| ps_to_dnabin | R Documentation |
ps_to_dnabin
Description
ps_to_dnabin
Usage
ps_to_dnabin(ps, seqnames = "unique")
Arguments
ps |
A |
seqnames |
(optional) A taxonomic rank from the |
Examples
save_fasta(ps)
save_fasta(ps = ps, file = "sequences.fasta", rank = "Genus")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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