API for alextkalinka/delboy
Differential-representation analysis by Elastic-net Logistic regression with BinOmial-thinning validitY tests
| Global functions | |
|---|---|
| .anti_tonic_convex | Source code |
| .argmax_ks_dist | Source code |
| .calculate_locfdr_misfit | Source code |
| .call_locfdr | Source code |
| .cleanup_qnorm | Source code |
| .collate_stats | Source code |
| .db_message | Source code |
| .min_range | Source code |
| .plotBinDev | Source code |
| .plotFCExpr | Source code |
| .plotFCExprFN | Source code |
| .plotLFCComp | Source code |
| .plotLFCNonNull | Source code |
| .plotLocFDR_num_nonnull | Source code |
| .plotMisClass | Source code |
| .predict_FP | Source code |
| .smooth_pvals | Source code |
| .symmetrise_q_vals | Source code |
| E2H | Man page |
| Tday35 | Man page |
| WZb | Man page |
| WZbNS | Man page |
| all_combinations_treat_samples | Man page Source code |
| assemble_elnet_hits | Man page Source code |
| batch_correct | Man page Source code |
| calc_perf_pval_windows | Man page Source code |
| calculate_bayes_factors_2dkcde | Man page Source code |
| calculate_perf_stats | Man page Source code |
| combine_validation_original_hits | Man page Source code |
| estimate_nonnull_logfc_distr | Man page Source code |
| estimate_number_non_nulls | Man page Source code |
| evaluate_performance_deg_calls | Man page Source code |
| exclude_predicted_FP_perf | Man page Source code |
| extract_grid_decision_boundary | Man page Source code |
| get_deseq2_results | Man page Source code |
| get_performance_stats | Man page Source code |
| hits | Man page Source code |
| make_coef_matrix | Man page Source code |
| make_delboy_hit_comparison_table | Man page Source code |
| make_design_matrix | Man page Source code |
| make_treat_factor | Man page Source code |
| perf_stats_deg | Man page Source code |
| plot.delboy | Man page Source code |
| predict_FP_delboy | Man page Source code |
| prep_bthin_matrix_diffrep | Man page Source code |
| prep_count_matrix | Man page Source code |
| prep_elnet_data | Man page Source code |
| print.delboy | Man page Source code |
| process_decision_boundary | Man page Source code |
| run_delboy | Man page Source code |
| run_deseq2 | Man page Source code |
| run_elnet_logistic_reg | Man page Source code |
| smooth_decision_boundary | Man page Source code |
| svm_false_positive_classification | Man page Source code |
