make_delboy_hit_comparison_table: make_delboy_hit_comparison_table
In alextkalinka/delboy: Differential-representation analysis by Elastic-net Logistic regression with BinOmial-thinning validitY tests
Description
Usage
Arguments
Value
View source: R/make_delboy_hit_comparison_table.R
Description
Make a TP, FN, FP data frame to aid analysis of delboy validation hits produced by delboy::evaluate_performance_rnaseq_calls.
Usage
1
make_delboy_hit_comparison_table(elnet_lr_res, deseq2_res, lfc_samp)
Arguments
elnet_lr_res
An object of class delboy_elnet, the output from running delboy::run_elnet_logistic_reg.
deseq2_res
The output from delboy::run_deseq2.
lfc_samp
A named vector of logFC values where the names are gene names. These are the true positives with their associated logFC values. All other genes are true negatives.
Value
A data frame.
alextkalinka/delboy documentation built on Feb. 2, 2022, 4:19 p.m.
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Description Usage Arguments Value
View source: R/make_delboy_hit_comparison_table.R
Description
Make a TP, FN, FP data frame to aid analysis of delboy validation hits produced by delboy::evaluate_performance_rnaseq_calls.
Usage
1 | make_delboy_hit_comparison_table(elnet_lr_res, deseq2_res, lfc_samp)
|
Arguments
elnet_lr_res |
An object of class |
deseq2_res |
The output from |
lfc_samp |
A named vector of logFC values where the names are gene names. These are the true positives with their associated logFC values. All other genes are true negatives. |
Value
A data frame.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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