assemble_elnet_hits: assemble_elnet_hits
In alextkalinka/delboy: Differential-representation analysis by Elastic-net Logistic regression with BinOmial-thinning validitY tests
Description
Usage
Arguments
Value
View source: R/assemble_elnet_hits.R
Description
Assembles Elastic-net hits together with log2 Fold Changes (from DESeq2) and an indication of whether a hit is predicted to be a false positive using an SVM fit.
Usage
1
assemble_elnet_hits(data, deseq2_res, decision_boundary)
Arguments
data
Output from delboy::combine_validation_original_hits.
deseq2_res
Output from delboy::run_deseq2.
decision_boundary
A data frame providing co-ordinates for the SVM-learned decision boundary for FPs.
Value
A data frame.
alextkalinka/delboy documentation built on Feb. 2, 2022, 4:19 p.m.
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Description Usage Arguments Value
View source: R/assemble_elnet_hits.R
Description
Assembles Elastic-net hits together with log2 Fold Changes (from DESeq2) and an indication of whether a hit is predicted to be a false positive using an SVM fit.
Usage
1 | assemble_elnet_hits(data, deseq2_res, decision_boundary)
|
Arguments
data |
Output from |
deseq2_res |
Output from |
decision_boundary |
A data frame providing co-ordinates for the SVM-learned decision boundary for FPs. |
Value
A data frame.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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