plot.delboy: plot.delboy

In alextkalinka/delboy: Differential-representation analysis by Elastic-net Logistic regression with BinOmial-thinning validitY tests

Description

Plotting for delboy objects.

Usage

## S3 method for class 'delboy'
plot(x, type = "lfc_expr", xlim = NULL, ylim = NULL, ...)

Arguments

x	Output from delboy::run_delboy.
type	A character string naming the plot type: lfc_expr (default): log fold change as a function of expression for validation and original input data with false positive decision boundary. lfc_expr_FN: same as lfc_samp but including false negatives. lfc_nonnull: the estimated log fold change distribution for non-null cases. deviance: binomial deviance for the elastic-net regression model. misclass: mis-classification probabilities for the elastic-net regression model. lfc_comp: log fold change boxplots for all hit types in both validation and original input data. locfdr: locfdr plot for non-null estimation.
xlim	xlim values for x-axis. Defaults to NULL for c(0.5,4).
ylim	xlim values for y-axis. Defaults to NULL for c(0,1.5).
...	Other arguments to be passed to plot.

Value

Used for side-effect of plotting.

alextkalinka/delboy documentation built on Feb. 2, 2022, 4:19 p.m.