calc_perf_pval_windows: calc_perf_pval_windows

In alextkalinka/delboy: Differential-representation analysis by Elastic-net Logistic regression with BinOmial-thinning validitY tests

Description

Calculates sensitivity and FDR (after excluding predicted false positives) across a progressively larger window of DEG p-values.

Usage

calc_perf_pval_windows(
  data,
  pval_column,
  gene_column,
  abs_lfc_column,
  deg_genes
)

Arguments

data	A data frame of DEG p-values.
pval_column	A character string naming the p-value column.
gene_column	A character string naming the gene column.
abs_lfc_column	A character string naming the abs log fold change column.
deg_genes	A character vector naming DEGs.

Value

A data frame of performance estimates across the p-val thresholds.

alextkalinka/delboy documentation built on Feb. 2, 2022, 4:19 p.m.