prep_count_matrix: prep_count_matrix

In alextkalinka/delboy: Differential-representation analysis by Elastic-net Logistic regression with BinOmial-thinning validitY tests

Description

Prepares an integer count matrix from a data frame of normalized counts so the data may be used by functions requiring matrix inputs.

Usage

prep_count_matrix(data, group_1, group_2, gene_column)

Arguments

data	A data frame of normalized count data (can contain negative values).
group_1	A character vector naming the columns that belong to group 1.
group_2	A character vector naming the columns that belong to group 2.
gene_column	A character string naming the column containing gene names.

Value

A matrix of integer counts with any negative values set to zero - rownames equal gene names.

alextkalinka/delboy documentation built on Feb. 2, 2022, 4:19 p.m.