Man pages for alextkalinka/delboy
Differential-representation analysis by Elastic-net Logistic regression with BinOmial-thinning validitY tests
| all_combinations_treat_samples | all_combinations_treat_samples |
| assemble_elnet_hits | assemble_elnet_hits |
| batch_correct | batch_correct |
| calc_perf_pval_windows | calc_perf_pval_windows |
| calculate_bayes_factors_2dkcde | calculate_bayes_factors_2dkcde |
| calculate_perf_stats | calculate_perf_stats |
| combine_validation_original_hits | combine_validation_original_hits |
| E2H | E2H |
| estimate_nonnull_logfc_distr | estimate_nonnull_logfc_distr |
| estimate_number_non_nulls | estimate_number_non_nulls |
| evaluate_performance_deg_calls | evaluate_performance_deg_calls |
| exclude_predicted_FP_perf | exclude_predicted_FP_perf |
| extract_grid_decision_boundary | extract_grid_decision_boundary |
| get_deseq2_results | get_deseq2_results |
| get_performance_stats | get_performance_stats |
| hits | hits |
| make_coef_matrix | make_coef_matrix |
| make_delboy_hit_comparison_table | make_delboy_hit_comparison_table |
| make_design_matrix | make_design_matrix |
| make_treat_factor | make_treat_factor |
| perf_stats_deg | perf_stats_deg |
| plot.delboy | plot.delboy |
| predict_FP_delboy | predict_FP_delboy |
| prep_bthin_matrix_diffrep | prep_bthin_matrix_diffrep |
| prep_count_matrix | prep_count_matrix |
| prep_elnet_data | prep_elnet_data |
| print.delboy | print.delboy |
| process_decision_boundary | process_decision_boundary |
| run_delboy | run_delboy |
| run_deseq2 | run_deseq2 |
| run_elnet_logistic_reg | run_elnet_logist_reg |
| smooth_decision_boundary | smooth_decision_boundary |
| svm_false_positive_classification | svm_false_positive_classification |
| Tday35 | Tday35 |
| WZb | WZb |
| WZbNS | WZbNS |
