batch_summary: BUSCO summary output for batch mode
In almeidasilvaf/cogeqc: Systematic quality checks on comparative genomics analyses
batch_summary R Documentation
BUSCO summary output for batch mode
Description
This object was created with the function read_busco() using
a batch run of BUSCO on the genomes of Herbaspirillum seropedicae SmR1
and Herbaspirillum rubrisubalbicans M1.
Usage
data(batch_summary)
Format
A 2-column data frame with the following variables:
- Class
Factor of BUSCO classes
- Frequency
Numeric with the percentage of BUSCOs in each class.
- Lineage
Character with the lineage dataset used.
- File
Character with the name of the FASTA file used.
Examples
data(batch_summary)
almeidasilvaf/cogeqc documentation built on Jan. 29, 2024, 7:20 a.m.
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| batch_summary | R Documentation |
BUSCO summary output for batch mode
Description
This object was created with the function read_busco() using
a batch run of BUSCO on the genomes of Herbaspirillum seropedicae SmR1
and Herbaspirillum rubrisubalbicans M1.
Usage
data(batch_summary)
Format
A 2-column data frame with the following variables:
- Class
Factor of BUSCO classes
- Frequency
Numeric with the percentage of BUSCOs in each class.
- Lineage
Character with the lineage dataset used.
- File
Character with the name of the FASTA file used.
Examples
data(batch_summary)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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