plot_busco: Plot BUSCO summary output
In almeidasilvaf/cogeqc: Systematic quality checks on comparative genomics analyses
View source: R/genome_assembly.R
plot_busco R Documentation
Plot BUSCO summary output
Description
Plot BUSCO summary output
Usage
plot_busco(summary_df = NULL)
Arguments
summary_df
Data frame with BUSCO summary output as returned
by read_busco().
Value
A ggplot object with a barplot of BUSCOs in each class.
Examples
# Single file
result_dir <- system.file("extdata", package = "cogeqc")
summary_df <- read_busco(result_dir)
# Batch mode
data(batch_summary)
plot_busco(summary_df)
plot_busco(batch_summary)
almeidasilvaf/cogeqc documentation built on Jan. 29, 2024, 7:20 a.m.
R Package Documentation
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View source: R/genome_assembly.R
| plot_busco | R Documentation |
Plot BUSCO summary output
Description
Plot BUSCO summary output
Usage
plot_busco(summary_df = NULL)
Arguments
summary_df |
Data frame with BUSCO summary output as returned
by |
Value
A ggplot object with a barplot of BUSCOs in each class.
Examples
# Single file
result_dir <- system.file("extdata", package = "cogeqc")
summary_df <- read_busco(result_dir)
# Batch mode
data(batch_summary)
plot_busco(summary_df)
plot_busco(batch_summary)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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