cogeqc-package: cogeqc: Systematic quality checks on comparative genomics...
In almeidasilvaf/cogeqc: Systematic quality checks on comparative genomics analyses
cogeqc-package R Documentation
cogeqc: Systematic quality checks on comparative genomics analyses
Description
cogeqc aims to facilitate systematic quality checks on standard comparative genomics analyses to help researchers detect issues and select the most suitable parameters for each data set. cogeqc can be used to asses: i. genome assembly and annotation quality with BUSCOs and comparisons of statistics with publicly available genomes on the NCBI; ii. orthogroup inference using a protein domain-based approach and; iii. synteny detection using synteny network properties. There are also data visualization functions to explore QC summary statistics.
Author(s)
Maintainer: FabrÃcio Almeida-Silva fabricio_almeidasilva@hotmail.com (ORCID)
Authors:
Yves Van de Peer yves.vandepeer@psb.vib-ugent.be (ORCID)
See Also
Useful links:
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| cogeqc-package | R Documentation |
cogeqc: Systematic quality checks on comparative genomics analyses
Description
cogeqc aims to facilitate systematic quality checks on standard comparative genomics analyses to help researchers detect issues and select the most suitable parameters for each data set. cogeqc can be used to asses: i. genome assembly and annotation quality with BUSCOs and comparisons of statistics with publicly available genomes on the NCBI; ii. orthogroup inference using a protein domain-based approach and; iii. synteny detection using synteny network properties. There are also data visualization functions to explore QC summary statistics.
Author(s)
Maintainer: FabrÃcio Almeida-Silva fabricio_almeidasilva@hotmail.com (ORCID)
Authors:
Yves Van de Peer yves.vandepeer@psb.vib-ugent.be (ORCID)
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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