plot_og_overlap: Plot pairwise orthogroup overlap between species

In almeidasilvaf/cogeqc: Systematic quality checks on comparative genomics analyses

Plot pairwise orthogroup overlap between species

Description

Plot pairwise orthogroup overlap between species

Usage

plot_og_overlap(stats_list = NULL, clust = TRUE)

Arguments

stats_list	A list of data frames with Orthofinder summary stats as returned by the function read_orthofinder_stats.
clust	Logical indicating whether to clust data based on overlap. Default: TRUE

Value

A ggplot object with a heatmap.

Examples

dir <- system.file("extdata", package = "cogeqc")
stats_list <- read_orthofinder_stats(dir)
plot_og_overlap(stats_list)

almeidasilvaf/cogeqc documentation built on Jan. 29, 2024, 7:20 a.m.