read_orthogroups: Read and parse orthogroups file created by OrthoFinder
In almeidasilvaf/cogeqc: Systematic quality checks on comparative genomics analyses
read_orthogroups R Documentation
Read and parse orthogroups file created by OrthoFinder
Description
This function converts the orthogroups file named Orthogroups.tsv to
a parsed data frame.
Usage
read_orthogroups(orthogroups_path = NULL)
Arguments
orthogroups_path
Path to Orthogroups/Orthogroups.tsv file generated
by OrthoFinder.
Value
A 3-column data frame with orthogroups, species IDs and
gene IDs, respectively.
Author(s)
Fabricio Almeida-Silva
Examples
path <- system.file("extdata", "Orthogroups.tsv.gz", package = "cogeqc")
og <- read_orthogroups(path)
almeidasilvaf/cogeqc documentation built on Jan. 29, 2024, 7:20 a.m.
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| read_orthogroups | R Documentation |
Read and parse orthogroups file created by OrthoFinder
Description
This function converts the orthogroups file named Orthogroups.tsv to a parsed data frame.
Usage
read_orthogroups(orthogroups_path = NULL)
Arguments
orthogroups_path |
Path to Orthogroups/Orthogroups.tsv file generated by OrthoFinder. |
Value
A 3-column data frame with orthogroups, species IDs and gene IDs, respectively.
Author(s)
Fabricio Almeida-Silva
Examples
path <- system.file("extdata", "Orthogroups.tsv.gz", package = "cogeqc")
og <- read_orthogroups(path)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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