Files in alyst/MotIV
Motif Identification and Validation
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllMethods.R
R/DBScores.R
R/calculatePosition.R
R/exportAsRangedData.R
R/exportAsTransfacFile.R
R/filterMotiv.R
R/getGademPWM.R
R/motifDistances.R
R/motifMatch.R
R/motifOccurences.R
R/plotDistance.R
R/plotDistribution.R
R/plotMotiv.R
R/readGademPWMFile.R
R/readPWMfile.R
R/seqLogo2.R
R/trimPWMedge.R
R/viewAlignment.R
R/zzz.R
configure
configure.ac
data/FOXA1_rGADEM.rda
data/jaspar2010.rda
data/jaspar2010_scores.rda
inst/extdata/example_motifs.txt
inst/extdata/jaspar2010.txt
inst/extdata/jaspar2010_PCC_SWU.scores
inst/extdata/observedPWMs.txt
man/FOXA_rGADEM.Rd
man/aligns-class.Rd
man/as.data.frame.Rd
man/combineMotifs.Rd
man/exportAsRangedData.Rd
man/exportAsTransfacFile.Rd
man/filter-class.Rd
man/filter-methods.Rd
man/filter.Rd
man/generateDBScores.Rd
man/getGademPWM.Rd
man/getPWM.rd
man/jaspar.Rd
man/makePWM.Rd
man/matches-class.Rd
man/motifDistance.Rd
man/motifMatch.Rd
man/motifOccurences.Rd
man/motiv-class.Rd
man/motiv-methods.Rd
man/plot.Rd
man/readGademPWMFile.Rd
man/readPWMfile.Rd
man/seqLogo2.Rd
man/setFilter.Rd
man/split.Rd
man/tf-class.Rd
man/trimPWMedge.Rd
man/viewAlignment.Rd
man/viewMotifs.Rd
src/Alignment.cpp
src/Alignment.h
src/ColumnComp.cpp
src/ColumnComp.h
src/DeclareAll.cpp
src/Makevars
src/Makevars.in
src/Makevars.win
src/Motif.cpp
src/Motif.h
src/MotifDistances.cpp
src/MotifMatch.cpp
src/PSSM.h
src/PlatformSupport.cpp
src/PlatformSupport.h
src/RandPSSMGen.cpp
src/RandPSSMGen.h
src/generateScoresDB.cpp
src/globals.h
vignettes/MotIV.Rnw
