getGademPWM: Recover PWM
In alyst/MotIV: Motif Identification and Validation
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function selects the PWMs contained in an object of type gadem.
Usage
1
getGademPWM(y)
Arguments
y
A gadem object.
Value
A list of PWM.
Author(s)
Eloi Mercier <emercier@chibi.ubc.ca>
Examples
1
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10
#####Database and Scores#####
path <- system.file(package="MotIV")
jaspar <- readPWMfile(paste(path,"/extdata/jaspar2010.txt",sep=""))
jaspar.scores <- readDBScores(paste(path,"/extdata/jaspar2010_PCC_SWU.scores",sep=""))
#####Input#####
data(FOXA1_rGADEM)
# motifs <- getGademPWM(gadem) #depreciated
motifs <- getPWM(gadem)
motifs.trimed <- lapply(motifs,trimPWMedge, threshold=1)
alyst/MotIV documentation built on May 12, 2019, 2:33 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
This function selects the PWMs contained in an object of type gadem.
Usage
1 | getGademPWM(y)
|
Arguments
y |
A |
Value
A list of PWM.
Author(s)
Eloi Mercier <emercier@chibi.ubc.ca>
Examples
1 2 3 4 5 6 7 8 9 10 | #####Database and Scores#####
path <- system.file(package="MotIV")
jaspar <- readPWMfile(paste(path,"/extdata/jaspar2010.txt",sep=""))
jaspar.scores <- readDBScores(paste(path,"/extdata/jaspar2010_PCC_SWU.scores",sep=""))
#####Input#####
data(FOXA1_rGADEM)
# motifs <- getGademPWM(gadem) #depreciated
motifs <- getPWM(gadem)
motifs.trimed <- lapply(motifs,trimPWMedge, threshold=1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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