motiv-methods: Motiv methods
In alyst/MotIV: Motif Identification and Validation

Description Usage Arguments Author(s) See Also Examples

Methods for motiv objects.

	 ## S4 method for signature 'motiv'
summary(object) 
	 ## S4 method for signature 'motiv'
names(x)
	 ## S4 method for signature 'motiv'
length(x)
	 ## S4 method for signature 'motiv'
similarity(x)
	 ## S4 method for signature 'motiv'
x[i,j=ANY, bysim=TRUE, ...,exact=TRUE, ignore.case=FALSE, drop=FALSE]

`object`	An object of class `motiv`.
`x`	An object of class `motiv`.
`i`	A string reprsenting a motif name.
`j`	NOT USED.
`bysim`	If `TRUE`, select by similarity name.
`...`	Further potential arguments passed to methods.
`ignore.case`	if FALSE, the pattern matching is case sensitive and if TRUE, case is ignored during matching
`exact`	If `TRUE`, search only for perfect name match.
`drop`	If `TRUE`, no match motifs will be dropped.