readPWMfile: Read Transfac File
In alyst/MotIV: Motif Identification and Validation
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
This function is use to read standard Transfac type file.
Usage
1
Arguments
file
Transfac file's name.
Details
This function is designed to read standard Transfac type file. For more information about the format, please refere to http://mcast.sdsc.edu/doc/transfac-format.html
Value
A list of matrix.
Author(s)
Eloi Mercier <emercier@chibi.ubc.ca>
Examples
1
2
3
4
#####Database and Scores#####
path <- system.file(package="MotIV")
jaspar <- readPWMfile(paste(path,"/extdata/jaspar2010.txt",sep=""))
jaspar.scores <- readDBScores(paste(path,"/extdata/jaspar2010_PCC_SWU.scores",sep=""))
alyst/MotIV documentation built on May 12, 2019, 2:33 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
This function is use to read standard Transfac type file.
Usage
1 |
Arguments
file |
Transfac file's name. |
Details
This function is designed to read standard Transfac type file. For more information about the format, please refere to http://mcast.sdsc.edu/doc/transfac-format.html
Value
A list of matrix.
Author(s)
Eloi Mercier <emercier@chibi.ubc.ca>
Examples
1 2 3 4 | #####Database and Scores#####
path <- system.file(package="MotIV")
jaspar <- readPWMfile(paste(path,"/extdata/jaspar2010.txt",sep=""))
jaspar.scores <- readDBScores(paste(path,"/extdata/jaspar2010_PCC_SWU.scores",sep=""))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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