filter-class: Class "filter"
In alyst/MotIV: Motif Identification and Validation
Description
Details
Objects from the Class
Slots
Author(s)
See Also
Examples
Description
This object information to be apply as filter.
Details
This class filter is used to selected motiv objects according the filter's arguments.
Objects from the Class
Objects can be created by calls of the form new("filter",name,tfname, top,evalueMax, lengthMax, valid).
Slots
- name
A name or a list of names.
- tfname
A transcription factor name or a list of TF names.
- evalueMax
An e-value between 0 and 1.
- top
Defined the depth of the filter.
- lengthMax
The maximum motif length.
- valid
The alignment that should be considered as valid.
Author(s)
Eloi Mercier <emercier@chibi.ubc.ca>
See Also
setFilter , filter, split, combine
Examples
1
showClass("filter")
alyst/MotIV documentation built on May 12, 2019, 2:33 a.m.
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Description Details Objects from the Class Slots Author(s) See Also Examples
Description
This object information to be apply as filter.
Details
This class filter is used to selected motiv objects according the filter's arguments.
Objects from the Class
Objects can be created by calls of the form new("filter",name,tfname, top,evalueMax, lengthMax, valid).
Slots
- name
A name or a list of names.
- tfname
A transcription factor name or a list of TF names.
- evalueMax
An e-value between 0 and 1.
- top
Defined the depth of the filter.
- lengthMax
The maximum motif length.
- valid
The alignment that should be considered as valid.
Author(s)
Eloi Mercier <emercier@chibi.ubc.ca>
See Also
setFilter , filter, split, combine
Examples
1 | showClass("filter")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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