motifOccurences: Motifs Occurences and Co-occurences

In alyst/MotIV: Motif Identification and Validation

Description

Get the number of motifs occurences and co-occurences from a rGADEM object.

Usage

occurences(gadem)
cooccurences(x)

Arguments

gadem	An object of type rGADEM.
x	A contingency table.

Value

occurences returns the contingency table of the number of motifs per sequences.

This object can be put in cooccurences to return the number of sequences where two motifs appear together.

Author(s)

Eloi Mercier <[e-mail]>

Examples

data("FOXA1_rGADEM")
oc <- occurences (gadem)
coc <- cooccurences (oc)
coc

alyst/MotIV documentation built on May 12, 2019, 2:33 a.m.