Man pages for amcdavid/SingleCellAnalysis
Tools for Analysis of Zero-Inflated, Continuous Data
| addEllipse | Add an confidence ellipses or other features to a ggpairs... |
| annotateBiPlot | Add bi-plot vectors onto a ggpairs scatter plot of... |
| as.data.frame.LinearClassifier | Combine predictions from a LinearClassifier with cData from... |
| chisq.pairwise | Chi-square tests of independence for each pair of genes |
| doGLMnet | Evaluate a glmSingleCellAssay classifier |
| doLDA | Run Linear Discriminant Analysis |
| fitZifNetwork | Fit Meinhousen-Buhlmann to a SingleCellAssay object |
| fortify.zifnetwork | Derive global properties of network fit |
| getCoef | Get coefficients and standard errors from a zlm fit |
| getZifNetwork | Put coefficients from a set of network regressions into a... |
| glmSingleCellAssay | ##Generic for cv.glmnet ## ##Accepts formula arguments ## |
| layoutZifNetwork | Turn an object from fitZifNetwork into a igraph object |
| oddsratio.pairwise | Calculate pairwise gene odds ratios |
| pearson.pairwise | Calculate pairwise correlation coefficient |
| prepClassifier | Generate biplot vectors from a 'LinearClassifier' |
| singleCellHeat | Plot a heatmap of a SingleCellAssay expression matrix |
| stat_ellipse | Draw a confidence ellipse |
| test.pearson.pairwise | Generate a matrix of z-statistics comparing two... |
