singleCellHeat: Plot a heatmap of a SingleCellAssay expression matrix

In amcdavid/SingleCellAnalysis: Tools for Analysis of Zero-Inflated, Continuous Data

Description

Plot a heatmap of a SingleCellAssay expression matrix (eg, from calling exprs). Optionally cluster and label rows by rowFactor, columns by colFactor, and/or sort the expression matrix by rowFactor/colFactor.

Usage

singleCellHeat(ee.sc, rowFactor, cluster = TRUE, order.by.factor = !cluster,
  colFactor, ...)

Arguments

ee.sc	expression matrix
rowFactor	named list of character vectors to be used as a labelling color schema for the rows.
cluster	boolean. Apply hclust to rows and columns.
order.by.factor	Sort expression matrix by rowFactors and colFactors. If cluster is TRUE than cluster within rowFactor/colFactor.
colFactor	named list of character vectors to be used as a labelling color schema for the columns.
...	passed to heatmap.2

Value

prints plot to current graphic device

amcdavid/SingleCellAnalysis documentation built on May 10, 2019, 10:27 a.m.