layoutZifNetwork: Turn an object from fitZifNetwork into a igraph object

In amcdavid/SingleCellAnalysis: Tools for Analysis of Zero-Inflated, Continuous Data

Description

Edges/Vertex may be given colors by setting Vattr or Ettr

Usage

layoutZifNetwork(zifFit, Vattr = NULL, Eattr = NULL, collapse = TRUE,
  weight = FALSE, union = TRUE, ...)

Arguments

zifFit	fitZifNetwork output
Vattr	character vector named with vertex names.
Eattr	data.frame with columns 'X1' 'X2' naming vertex pairs and 'value' giving the value for this set of edges
collapse	should the discrete/continuous parts be collapsed?
union	within each layer, should we take the union of a vertex's neighborhood, or should we take the intersection?
weight	currently ignored
...	passed to getZifNetwork

Value

igraph object, with attributes

amcdavid/SingleCellAnalysis documentation built on May 10, 2019, 10:27 a.m.