Description Usage Arguments Value Author(s)
Conduct a chi-square tests of independence for each pair of genes. The binary (expressed/not) values are used to build the contingency tables. The chi-square test statistics for each pair of genes is returned, with zeroes placed along the main diagonal. Significance could be assessed (in large samples) by comparison to a chi-square distribution with 1-dof.
1 | chisq.pairwise(sc)
|
sc |
SingleCellAssay, on a thresholded (et) layer |
matrix of chisq test statistics
andrew
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