computeProportion: Stacked bar plot showing the proportion of cells across...

In amsszlh/scMC: Integrating and comparing multiple single cell genomic datasets

Description

Stacked bar plot showing the proportion of cells across certrain cell groups

Usage

computeProportion(
  object,
  x = "cellType",
  fill = "condition",
  facet = NULL,
  colors.use = NULL,
  n.colors = 8,
  n.row = 1,
  title.name = NULL,
  legend.title = NULL,
  xlabel = NULL,
  ylabel = "Cellular composition (%)",
  width = 0.8,
  show.legend = TRUE,
  x.lab.rot = TRUE,
  text.size = 10,
  flip = FALSE
)

Arguments

object	Seurat object
x	Name of one metadata column to show on the x-axis
fill	Name of one metadata column to compare the proportion of cells
facet	Name of one metadata column defining faceting groups
colors.use	defining the color of stacked bar plot; either a char vector defining a color for each cell group or a palette name from brewer.pal
n.colors	Number of colors when setting colors.use to be a palette name from brewer.pal
n.row	Number of rows in facet_grid()
title.name	Name of the main title
legend.title	Name of legend
xlabel	Name of x label
ylabel	Name of y label
width	bar width
show.legend	Whether show the legend
x.lab.rot	Whether rorate the xtick labels
text.size	font size
flip	Whether flip the cartesian coordinates so that horizontal becomes vertical

Value

ggplot2 object

amsszlh/scMC documentation built on Jan. 2, 2021, 1:51 p.m.