integrateData: Infer a shared embedding of cells across all datasets after...

In amsszlh/scMC: Integrating and comparing multiple single cell genomic datasets

Description

Infer a shared embedding of cells across all datasets after removing technical variation

Usage

integrateData(
  object,
  mat,
  assay = NULL,
  new.assay.name = NULL,
  nDims.scMC = 40,
  lambda = 1
)

Arguments

object	unintegrated Seurat object
mat	structured matrices obtained from learnTechnicalVariation
assay	assay to store the integrated data
new.assay.name	Name for the new assay containing the integrated data
nDims.scMC	number of dimensions to compute in the scMC integrated space
lambda	the tuning parameter, non-negative.

Value

Seurat object with an integrated assay

amsszlh/scMC documentation built on Jan. 2, 2021, 1:51 p.m.