identifyConfidentCells: identify confident cells in each cell cluster
In amsszlh/scMC: Integrating and comparing multiple single cell genomic datasets
Description
Usage
Arguments
Value
Description
identify confident cells in each cell cluster
Usage
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identifyConfidentCells(
object.list,
features.integration,
quantile.cutoff = 0.75,
min.cluster = 20,
assay = NULL
)
Arguments
object.list
a list of Seurat object
features.integration
features used to identify confident cells
quantile.cutoff
quantile cutoff (default = 0.75)
min.cluster
the minimum number of cells in the cluster for identifying confident cells
assay
Assay to use
Value
a list of Seurat object with identified confident cells in each dataset
amsszlh/scMC documentation built on Jan. 2, 2021, 1:51 p.m.
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Description Usage Arguments Value
Description
identify confident cells in each cell cluster
Usage
1 2 3 4 5 6 7 | identifyConfidentCells(
object.list,
features.integration,
quantile.cutoff = 0.75,
min.cluster = 20,
assay = NULL
)
|
Arguments
object.list |
a list of Seurat object |
features.integration |
features used to identify confident cells |
quantile.cutoff |
quantile cutoff (default = 0.75) |
min.cluster |
the minimum number of cells in the cluster for identifying confident cells |
assay |
Assay to use |
Value
a list of Seurat object with identified confident cells in each dataset
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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