Man pages for andreasmock/MetaboDiff
An R package for differential metabolomic analysis
| calculate_MS | Calculate module significance |
| create_mae | Create MultiAssayExperiment object for MetaboDiff |
| diff_test | Perform comparative analysis using T-Test |
| diss_matrix | Construct dissimilarity matrix for metabolic correlation... |
| get_SMPDBanno | Annotation using Small Molecule Pathway Database (SMPDB) |
| identify_modules | Identification of metabolic correlation modules |
| knn_impute | Impute metabolomic data by k-nearest neighbour imputation |
| MOI_plot | Module of interest plot |
| MS_plot | Module significance plot |
| na_heatmap | Heatmap to visualize missing metabolites across the samples |
| name_modules | Name metabolic correlation modules |
| normalize_met | Normalize metabolomic data by vsn |
| outlier_heatmap | Heatmap to visualize outliers in the study set |
| pca_plot | pca plot |
| quality_plot | Quality plot of processing steps |
| remove_cluster | Remove cluster from metabolomic data |
| tsne_plot | tSNE plot |
| variance_boxplot | Boxplot comparing the distribution of variance in metabolic... |
| volcano_plot | Volcano plot of differential analysis |
