get_SMPDBanno: Annotation using Small Molecule Pathway Database (SMPDB)

Description Usage Arguments Value Examples

View source: R/get_SMPDBanno.R

Description

Annotation using Small Molecule Pathway Database (SMPDB)

Usage

1
get_SMPDBanno(met, column_kegg_id, column_hmdb_id, column_chebi_id)

Arguments

met

MultiAssayExperiment object created with create_mae

column_kegg_id

Column number containing KEGG ids.

column_chebi_id

Column number containing ChEBI ids.

column_hmbd_id

Column number containing HMDB ids.

Value

MultiAssayExperiment object with SMPDB annotation

Examples

1
get_SMPDBanno(met_example,column_kegg_id=6,column_hmdb_id=7,column_chebi_id=NA)

andreasmock/MetaboDiff documentation built on Oct. 31, 2020, 8:18 a.m.