An R package for differential metabolomic analysis

calculate_MS | Calculate module significance |

create_mae | Create MultiAssayExperiment object for MetaboDiff |

diff_test | Perform comparative analysis using T-Test |

diss_matrix | Construct dissimilarity matrix for metabolic correlation... |

get_SMPDBanno | Annotation using Small Molecule Pathway Database (SMPDB) |

identify_modules | Identification of metabolic correlation modules |

knn_impute | Impute metabolomic data by k-nearest neighbour imputation |

MOI_plot | Module of interest plot |

MS_plot | Module significance plot |

na_heatmap | Heatmap to visualize missing metabolites across the samples |

name_modules | Name metabolic correlation modules |

normalize_met | Normalize metabolomic data by vsn |

outlier_heatmap | Heatmap to visualize outliers in the study set |

pca_plot | pca plot |

quality_plot | Quality plot of processing steps |

remove_cluster | Remove cluster from metabolomic data |

tsne_plot | tSNE plot |

variance_boxplot | Boxplot comparing the distribution of variance in metabolic... |

volcano_plot | Volcano plot of differential analysis |

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