calculate_MS | Calculate module significance |
create_mae | Create MultiAssayExperiment object for MetaboDiff |
diff_test | Perform comparative analysis using T-Test |
diss_matrix | Construct dissimilarity matrix for metabolic correlation... |
get_SMPDBanno | Annotation using Small Molecule Pathway Database (SMPDB) |
identify_modules | Identification of metabolic correlation modules |
knn_impute | Impute metabolomic data by k-nearest neighbour imputation |
MOI_plot | Module of interest plot |
MS_plot | Module significance plot |
na_heatmap | Heatmap to visualize missing metabolites across the samples |
name_modules | Name metabolic correlation modules |
normalize_met | Normalize metabolomic data by vsn |
outlier_heatmap | Heatmap to visualize outliers in the study set |
pca_plot | pca plot |
quality_plot | Quality plot of processing steps |
remove_cluster | Remove cluster from metabolomic data |
tsne_plot | tSNE plot |
variance_boxplot | Boxplot comparing the distribution of variance in metabolic... |
volcano_plot | Volcano plot of differential analysis |
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