Man pages for andreasmock/MetaboDiff
An R package for differential metabolomic analysis

calculate_MSCalculate module significance
create_maeCreate MultiAssayExperiment object for MetaboDiff
diff_testPerform comparative analysis using T-Test
diss_matrixConstruct dissimilarity matrix for metabolic correlation...
get_SMPDBannoAnnotation using Small Molecule Pathway Database (SMPDB)
identify_modulesIdentification of metabolic correlation modules
knn_imputeImpute metabolomic data by k-nearest neighbour imputation
MOI_plotModule of interest plot
MS_plotModule significance plot
na_heatmapHeatmap to visualize missing metabolites across the samples
name_modulesName metabolic correlation modules
normalize_metNormalize metabolomic data by vsn
outlier_heatmapHeatmap to visualize outliers in the study set
pca_plotpca plot
quality_plotQuality plot of processing steps
remove_clusterRemove cluster from metabolomic data
tsne_plottSNE plot
variance_boxplotBoxplot comparing the distribution of variance in metabolic...
volcano_plotVolcano plot of differential analysis
andreasmock/MetaboDiff documentation built on Oct. 31, 2020, 8:18 a.m.