MS_plot: Module significance plot

Description Usage Arguments Value Examples

View source: R/MS_plot.R

Description

Module significance plot

Usage

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MS_plot(met, group_factor, p_value_cutoff, fold_change_cutoff,
  p_adjust = FALSE)

Arguments

met

fully preprocessed MultiAssayExperiment object with slots "raw", "imputed", "norm" and "norm_imputed"

group_factor

name of column in colData for grouping

Value

Module significance plot

Examples

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MS_plot(met_example, group_factor = "tumor_normal",p_value_cutoff=0.05, p_adjust=FALSE)

andreasmock/MetaboDiff documentation built on Oct. 31, 2020, 8:18 a.m.