name_modules: Name metabolic correlation modules
In andreasmock/MetaboDiff: An R package for differential metabolomic analysis
Description
Usage
Arguments
Value
Examples
Description
Name metabolic correlation modules
Usage
1
name_modules(met, pathway_annotation)
Arguments
met
fully preprocessed MultiAssayExperiment object with slots "raw", "imputed", "norm" and "norm_imputed"
pathway_annotation
Pathway annotation from rowData
Value
names of metabolic correlation modules stored in metadata(met)$METree$labels
Examples
1
name_modules(met_example, pathway_annotation="SMPDB|Pathway.Name")
andreasmock/MetaboDiff documentation built on Oct. 31, 2020, 8:18 a.m.
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Description Usage Arguments Value Examples
Description
Name metabolic correlation modules
Usage
1 | name_modules(met, pathway_annotation)
|
Arguments
met |
fully preprocessed MultiAssayExperiment object with slots "raw", "imputed", "norm" and "norm_imputed" |
pathway_annotation |
Pathway annotation from rowData |
Value
names of metabolic correlation modules stored in metadata(met)$METree$labels
Examples
1 | name_modules(met_example, pathway_annotation="SMPDB|Pathway.Name")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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