API for andrewGhazi/malacoda
Bayesian Analysis of High-Throughput Genomic Assays
| Global functions | |
|---|---|
| .onLoad | Source code |
| activities_example | Man page |
| barcode_by_id | Man page |
| check_ts_precision | Source code |
| compute_activities | Man page Source code |
| compute_kl_est | Man page Source code |
| cond_prior_example | Man page |
| count_barcodes | Man page Source code |
| count_barcodes_in_fastq | Man page Source code |
| cut_and_count_fb | Source code |
| cut_out_seqs | Man page Source code |
| decode_errors | Man page Source code |
| dropout_example | Man page |
| example_posterior | Man page |
| example_result | Man page |
| fastq_examples | Man page |
| find_prior_weights | Man page Source code |
| fit_all_nb_mle | Source code |
| fit_cond_prior | Man page Source code |
| fit_dropout_gamma | Source code |
| fit_dropout_model | Man page Source code |
| fit_gamma | Source code |
| fit_gamma_stan | Source code |
| fit_grouped_prior | Man page Source code |
| fit_marg_prior | Man page Source code |
| fit_mpra_mle | Source code |
| fit_mpra_model | Man page Source code |
| fit_nb | Man page Source code |
| fit_one_m_prior | Source code |
| fit_one_p_prior | Source code |
| fit_weighted_gamma_stan | Source code |
| fit_weighted_gammas_stan | Source code |
| format_conditional_prior | Source code |
| generate_distance_matrix | Man page Source code |
| get_kl_divergences | Man page Source code |
| get_label_y | Man page |
| get_prior_ratios | Man page Source code |
| get_sample_correlations | Man page Source code |
| get_sample_depths | Man page Source code |
| get_well_represented | Man page Source code |
| increase_regularization | Man page Source code |
| malacoda | Man page |
| malacoda-package | Man page |
| malacoda_intervals | Man page |
| marg_prior_example | Man page |
| mpra_tile_plot | Man page |
| plot_dna_representation | Man page |
| plot_mpra_correlations | Man page |
| plot_prior_ratios | Man page |
| plot_prior_samples | Man page |
| plot_ratio_hexs | Man page |
| posterior_beeswarm | Man page Source code |
| ratios_example | Man page |
| replace_na_0 | Source code |
| run_activity_tests | Man page Source code |
| run_dropout_sampler | Source code |
| run_mpra_sampler | Source code |
| sample_from_prior | Man page Source code |
| score_annotation | Man page Source code |
| summarise_cond_prior | Man page Source code |
| summarise_one_prior | Man page Source code |
| summarise_prior_samples | Man page Source code |
| test_one_variant | Source code |
| trim_and_filter | Man page Source code |
| u_deepsea | Man page |
| umpra_example | Man page |
