API for andzajan/mzmatch.R
mzmatch and PeakML integration for XCMS.

Global functions
PeakML.BlankFilter Man page Source code
PeakML.ComparePeakSets Man page Source code
PeakML.DilutionTrendFilter Man page Source code
PeakML.FilterPeakGroups Man page Source code
PeakML.GapFiller Man page Source code
PeakML.Isotope.DB2Text Man page Source code
PeakML.Isotope.ReadDB Man page Source code
PeakML.Isotope.TargettedIsotopes Man page Source code
PeakML.Isotope.UntargettedIsotopes Man page Source code
PeakML.Isotope.filterPeaks Man page Source code
PeakML.Isotope.filteroutUnlabelled Man page Source code
PeakML.Isotope.getAbunMtxList Man page Source code
PeakML.Isotope.getChromData Man page Source code
PeakML.Isotope.getFCMtx Man page Source code
PeakML.Isotope.getFCMtxAbun Man page Source code
PeakML.Isotope.getIsotopes Man page Source code
PeakML.Isotope.getMassWindow Man page Source code
PeakML.Isotope.getRatioMtxList Man page Source code
PeakML.Isotope.getTrendList Man page Source code
PeakML.Isotope.getTrendMtx Man page Source code
PeakML.Isotope.plotSamples Man page Source code
PeakML.Isotope.plotUntargettedIsotopes Man page Source code
PeakML.Isotope.processTargettedIsotopes Man page Source code
PeakML.Isotope.processUntargettedIsotopes Man page Source code
PeakML.Methods.DBidToCompoundName Man page Source code
PeakML.Methods.PeakShapeCorrelation Man page Source code
PeakML.Methods.baseCorrection Man page Source code
PeakML.Methods.combinePeakMLfiles Man page Source code
PeakML.Methods.extractFileName Man page Source code
PeakML.Methods.extractPeakGroups Man page Source code
PeakML.Methods.formula2mass Man page Source code
PeakML.Methods.getCarbon Man page Source code
PeakML.Methods.getChromData Man page Source code
PeakML.Methods.getCompleteTable Man page Source code
PeakML.Methods.getESIpolarity Source code
PeakML.Methods.getElements Man page Source code
PeakML.Methods.getGroupAnnotations Man page Source code
PeakML.Methods.getMassCorrection Man page Source code
PeakML.Methods.getPPMMass Man page Source code
PeakML.Methods.getPPMWindow Man page Source code
PeakML.Methods.getPeakData Man page Source code
PeakML.Methods.getPhenoData Man page Source code
PeakML.Methods.getProtonCoef Man page Source code
PeakML.Methods.getProtonMass Man page Source code
PeakML.Methods.getRTWindow Man page Source code
PeakML.Methods.getRTWindowFromString Man page Source code
PeakML.Methods.getRawDataPaths Man page Source code
PeakML.Methods.getRawMat Man page Source code
PeakML.Methods.getRawSignals Man page Source code
PeakML.Methods.getStdErr Man page Source code
PeakML.Methods.mzML.startTimeStamp Source code
PeakML.Methods.writeGroupAnnotations Man page Source code
PeakML.Normalization Man page Source code
PeakML.PeakChopper Source code
PeakML.Plot.BarPlot Man page Source code
PeakML.Plot.Chromatograms Man page Source code
PeakML.Plot.RankProducts Man page Source code
PeakML.Plot.RelatedPeaks Man page Source code
PeakML.QCIntensityCorrection Source code
PeakML.QCRSDFilter2 Source code
PeakML.QCSignalCorrection Source code
PeakML.RankProducts Man page Source code
PeakML.Read Man page Source code
PeakML.Viewer Man page Source code
PeakML.Write Man page Source code
PeakML.bubbleplot Man page Source code
PeakML.get.attributes Man page Source code
PeakML.trendPlot Man page Source code
PeakML.xcms.read Man page Source code
PeakML.xcms.write Man page Source code
PeakML.xcms.write.SingleInstance Man page Source code
PeakML.xcms.write.SingleMeasurement Man page Source code
RCreateXMLDB Man page Source code
TrendPlot Man page Source code
mzmatch.R Man page
mzmatch.R-package Man page
mzmatch.R.Setup Man page Source code
mzmatch.XML.data.base.parser Man page Source code
mzmatch.init Man page Source code
mzmatch.ipeak.Combine Man page Source code
mzmatch.ipeak.ExtractBackgroundIons Man page Source code
mzmatch.ipeak.align.CowCoda Man page Source code
mzmatch.ipeak.convert.ConvertToText Man page Source code
mzmatch.ipeak.db.CreateCycDB Man page Source code
mzmatch.ipeak.db.CreateHMDB Man page Source code
mzmatch.ipeak.db.CreateLMDB Man page Source code
mzmatch.ipeak.db.DBToText Man page Source code
mzmatch.ipeak.filter.FilterCluster Man page Source code
mzmatch.ipeak.filter.FilterOnRelationIDs Man page Source code
mzmatch.ipeak.filter.NoiseFilter Man page Source code
mzmatch.ipeak.filter.RSDFilter Man page Source code
mzmatch.ipeak.filter.SimpleFilter Man page Source code
mzmatch.ipeak.graphics.PeakMLToTIC Man page Source code
mzmatch.ipeak.normalisation.Normalisation Man page Source code
mzmatch.ipeak.normalisation.VanDeSompele Man page Source code
mzmatch.ipeak.sort.MetAssign Man page Source code
mzmatch.ipeak.sort.PeakSort Man page Source code
mzmatch.ipeak.sort.RelatedPeaks Man page Source code
mzmatch.ipeak.util.BreakupRelated Man page Source code
mzmatch.ipeak.util.ExtractSets Man page Source code
mzmatch.ipeak.util.Identify Man page Source code
mzmatch.ipeak.util.Recovery Man page Source code
unsafeFindInterval2 Source code
unsafeFindInterval3 Source code
andzajan/mzmatch.R documentation built on Nov. 18, 2017, 9:57 a.m.