Files in anschue/toxprofileR
Functions for Retrieving Dynamic Toxicogenomic Fingerprints
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/app.R
R/array_qc.R
R/calc_logfc.R
R/calculateFC_public.R
R/cluster_enrichment.R
R/create_nodelist.R
R/createkohonen.R
R/data_for_shiny.R
R/elist_median.R
R/fit_apical.R
R/fit_tcta.R
R/getBM_annotation.R
R/get_CI_diffs.R
R/get_extrema_nodes.R
R/get_hits.R
R/get_sig_level.R
R/get_tcta_params.R
R/import_data.R
R/nodelist_from_logFC.R
R/normalize_batch.R
R/plot3D.R
R/plottimepoint.R
R/preprocess.R
R/qc_plots.R
R/read_raw.R
R/remove_outliers.R
R/som_plots.R
R/spline_fit.R
R/sysdata.rda
R/tcta_functions.R
README.md
data-raw/Annotation/GPL20686annotation.Rds
data-raw/Annotation/wildtype-expression_fish_2018.11.20.txt
data-raw/fetchdata.R
data-raw/toxuniverse/universe_grid.Rd
data-raw/toxuniverse/universe_nodeframe.Rd
data/grid.rda
data/nodeframe.rda
man/arrayqc.Rd
man/calc_logfc.Rd
man/calc_logfc_public.Rd
man/create_nodelist.Rd
man/create_shiny_nodeplotlist.Rd
man/create_shiny_plotlist.Rd
man/create_tox_universe.Rd
man/elist.median.Rd
man/enrich_clusters.Rd
man/fit_apical.Rd
man/fit_tcta.Rd
man/gauss_gauss.Rd
man/getBM_annotation.Rd
man/get_CI_diffs.Rd
man/get_extrema_nodes.Rd
man/get_hits_exons.Rd
man/get_hits_genome.Rd
man/get_sig_level.Rd
man/get_tcta_params.Rd
man/hill_gauss.Rd
man/importData.Rd
man/nodelist_from_logFC.Rd
man/normalizeBatch.Rd
man/plot3D_node.Rd
man/plot_nodecode.Rd
man/plot_noderesponse.Rd
man/plot_noderesponse_time.Rd
man/plot_portrait.Rd
man/plot_portrait_grid.Rd
man/preprocess.Rd
man/qc_plots.Rd
man/read_raw_public.Rd
man/remove_outliers.Rd
man/save_shiny_data.Rd
man/sens_t.Rd
man/spline_fit.Rd
man/tfp_browser.Rd
toxprofileR.Rproj
