Files in araezopsis/ngscomander
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/calc_rpkm.R
R/class-cmdopt.R
R/class-inf.R
R/extract_file_from_tar.R
R/fastqc.R
R/fq_ext.R
R/glue-bowtie.R
R/glue-bowtie2.R
R/glue-cuff.R
R/glue-cutadapt.R
R/glue-fastx-toolkit.R
R/glue-featurecounts.R
R/glue-hisat.R
R/glue-star.R
R/glue.R
R/glue_fastp.R
R/merge_gz.R
R/nothing.R
R/samtools-stat.R
R/utils-pipe.R
man/as_input_file.Rd
man/calc_rpkm.Rd
man/calc_rpkm_from_featurecounts.Rd
man/calc_rpm.Rd
man/calc_rpm_from_featurecounts.Rd
man/calc_tpm.Rd
man/calc_tpm_from_featurecounts.Rd
man/cmd_get.Rd
man/cmd_set_extract_file_from_tar.Rd
man/cmd_set_fastp_qf.Rd
man/cmd_set_merge_gz.Rd
man/fastqc_data.Rd
man/fastqc_summary.Rd
man/get_file_ext.Rd
man/glue_bam2wig.Rd
man/glue_bam_index.Rd
man/glue_bam_sort.Rd
man/glue_bamstat.Rd
man/glue_bowtie2_bamsort.Rd
man/glue_bowtie2_genome_generate.Rd
man/glue_bowtie2_rm_contami.Rd
man/glue_bowtie2_rm_contami_pe.Rd
man/glue_bowtie_bamsort.Rd
man/glue_bowtie_genome_generate.Rd
man/glue_check_gz_size.Rd
man/glue_cuffcompare.Rd
man/glue_cuffdiff.Rd
man/glue_cufflinks.Rd
man/glue_cuffmerge.Rd
man/glue_cuffnorm.Rd
man/glue_cuffquant.Rd
man/glue_fastp_qf.Rd
man/glue_fastp_qf_pe.Rd
man/glue_fastq_qf.Rd
man/glue_fastq_qf_cl.Rd
man/glue_fastqc.Rd
man/glue_fqgz2rfqxz.Rd
man/glue_genomecov.Rd
man/glue_gff2bed.Rd
man/glue_hisat_genome_generate.Rd
man/glue_pe_cutadapt.Rd
man/glue_pe_featurecounts.Rd
man/glue_pe_hisat_bamsort.Rd
man/glue_pe_star_bamsort.Rd
man/glue_rfqxz2fqgz.Rd
man/glue_se_cutadapt.Rd
man/glue_se_featurecounts.Rd
man/glue_se_hisat_bamsort.Rd
man/glue_se_star_bamsort.Rd
man/glue_star_genome_generate.Rd
man/merge_featurecount_output.Rd
man/new_cmdopt.Rd
man/param_general.Rd
man/param_genomeidx.Rd
man/pipe.Rd
man/pipeline_cuffdiff.Rd
man/pipeline_cuffdiff_noRABT.Rd
man/print.cmdopt.Rd
man/set_file_ext.Rd
man/set_inf_class.Rd
ngscmdr.Rproj
