glue_bowtie2_rm_contami: Remove reads from contamination with bowtie2
In araezopsis/ngscomander:
Description
Remove reads from contamination with bowtie2
Usage
1
2
glue_bowtie2_rm_contami(head_label, in_dir, fasta_path,
out_dir = "fastq_rm", idx_dir = "./idx_bw2", core_num = 4)
Arguments
head_label
sample label
in_dir
A path of directory which contains input files
fasta_path
.tar file path
out_dir
A path of directory for saving output files
idx_dir
directory path for the indexing output
core_num
number of cpu core
araezopsis/ngscomander documentation built on Sept. 19, 2019, 2:22 a.m.
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Description
Remove reads from contamination with bowtie2
Usage
1 2 | glue_bowtie2_rm_contami(head_label, in_dir, fasta_path,
out_dir = "fastq_rm", idx_dir = "./idx_bw2", core_num = 4)
|
Arguments
head_label |
sample label |
in_dir |
A path of directory which contains input files |
fasta_path |
.tar file path |
out_dir |
A path of directory for saving output files |
idx_dir |
directory path for the indexing output |
core_num |
number of cpu core |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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