glue_se_hisat_bamsort: Map single-end reads with hisat and output a sorted bam file

Description Usage Arguments

View source: R/glue-hisat.R

Description

Map single-end reads with hisat and output a sorted bam file

Usage

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glue_se_hisat_bamsort(head_label, core_num = 2, idx_name = "TAIR10",
  idx_dir = "./idx_hisat", in_dir = "./fastq",
  out_dir = "./mapped_by_hisat")

Arguments

head_label

sample label

core_num

number of cpu core

idx_name

index name

idx_dir

directory path for the indexing output

in_dir

A path of directory which contains input files

out_dir

A path of directory for saving output files


araezopsis/ngscomander documentation built on Sept. 19, 2019, 2:22 a.m.